/***************************************************************************
 *   Copyright (C) 2007 by Alexandre Masselot,,,   *
 *   alex@alex-laptop   *
 *                                                                         *
 *   This program is free software; you can redistribute it and/or modify  *
 *   it under the terms of the GNU Library General Public License as       *
 *   published by the Free Software Foundation; either version 2 of the    *
 *   License, or (at your option) any later version.                       *
 *                                                                         *
 *   This program is distributed in the hope that it will be useful,       *
 *   but WITHOUT ANY WARRANTY; without even the implied warranty of        *
 *   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the         *
 *   GNU General Public License for more details.                          *
 *                                                                         *
 *   You should have received a copy of the GNU Library General Public     *
 *   License along with this program; if not, write to the                 *
 *   Free Software Foundation, Inc.,                                       *
 *   59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.             *
 ***************************************************************************/
#ifndef RUNLCMSMSREADERMGF_H
#define RUNLCMSMSREADERMGF_H

#include "runlcmsmsreader.h"
#include "spectrumpeakintensityutilities.h"


#include "boost/regex.hpp"
#include "boost/lexical_cast.hpp"
#include <string>

using namespace std;
namespace bol{
/**
  Read a run from an MGF file

  @author Alexandre Masselot,,, <alex@alex-laptop>
 */
  class RunLcmsmsReaderMGF : public RunLcmsmsReader
  {
    private:
      static boost::regex s_re_charge;
      static boost::regex s_re_begin;
      static boost::regex s_re_end;
      static boost::regex s_re_pepmass;
      static boost::regex s_re_title;
      static boost::regex s_re_peak;
    public:
      RunLcmsmsReaderMGF(){}

      ~RunLcmsmsReaderMGF(){}

      void init(RunLcmsms& run, istream* input);

      SpectrumLcmsms* nextSpectrum(RunLcmsms& run);
  };

}

#endif
